{"id":692,"date":"2009-01-15T14:05:05","date_gmt":"2009-01-15T14:05:05","guid":{"rendered":"http:\/\/occamstypewriter.org\/mindthegap\/2009\/01\/15\/in_which_i_remain_precise_to_two_decimal_places\/"},"modified":"2009-01-15T14:05:05","modified_gmt":"2009-01-15T14:05:05","slug":"in_which_i_remain_precise_to_two_decimal_places","status":"publish","type":"post","link":"https:\/\/occamstypewriter.org\/mindthegap\/2009\/01\/15\/in_which_i_remain_precise_to_two_decimal_places\/","title":{"rendered":"In which I remain precise \u2013 to two decimal places"},"content":{"rendered":"<p>My lab-side manner could charitably be described as &#8216;cautious&#8217; \u2013 although &#8216;paranoid&#8217; is probably closer to the truth. I am reluctant to take shortcuts in an experiment, for example, even when I suspect that it will make little difference. And I&#8217;m one of those annoying people who record their DNA concentrations on the tube as 1.998 micrograms per microliter instead of 2 \u2013 simply because the spectrophotometer is able to deliver readings to that level of fussiness.<\/p>\n<p>\n<img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/www.lablit.com\/images\/Precise.jpg\" alt=\"\" width=\"500\" height=\"301\" \/><br \/>\n<strong>Significant digits<\/strong> <em>A Gilson P2 Pipetteman dialled to 0.165 microliters<\/em> <\/p>\n<p>\nThis obsession extends to my pipetting. Yesterday morning, I did a few calculations and worked out that I&#8217;d need to add 0.165 microliters of an RNA oligo duplex to achieve the correct concentration. Of course I could have rounded to 0.17, because my trusty P2 is probably not that accurate, but I didn&#8217;t. (And yes, I brought the final volume up to 10 microliters with 9.835 microliters of water, though on a P20 instrument, the closest you can dial without microscopic vision is about 9.84). <\/p>\n<p>\nI&#8217;ve always been like this. In school, I remember being affected very deeply by a math class discussion about <em>precision<\/em> versus <em>accuracy<\/em>: the classic illustration of the arrow-pierced bullseye target is still emblazoned on my long-term memory (see <a href=\"http:\/\/en.wikipedia.org\/wiki\/Accuracy\">Wikipedia<\/a> for a version of this). Even when I am cooking, I tend to measure water to the bottom of the meniscus in the measuring cup, and dry ingredients to two decimal places on our swanky digital scale. I may not always be accurate, but by God am I precise. <\/p>\n<p>\nSo is this behavior of any real value in the modern molecular biology laboratory, or is it all a sort of superstition? I guess I think that if you measure things carefully with the same instrument, all of your manipulations should be precise, if not accurate, on a relative scale. I know that there is no effective difference between 0.043 and 0.04 in practical biological terms for the experiments I&#8217;m doing, but it&#8217;s possible that my experiments are more reproducible as a result, and possibly more comparable when done on separate occasions. <\/p>\n<p>\nI must confess, however, that I&#8217;ve caught myself relaxing a little bit on this point recently, for processes that I am pretty sure are fully robust. Only this morning I threw caution to the wind and diluted an antibody 1:100 in buffer by adding 1 microliter to 100 microliters instead of to 99. And I felt a lovely illicit little thrill in the process.<\/p>\n<p>\nSometimes you have to live dangerously.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>My lab-side manner could charitably be described as &#8216;cautious&#8217; \u2013 although &#8216;paranoid&#8217; is probably closer to the truth. I am reluctant to take shortcuts in an experiment, for example, even when I suspect that it will make little difference. And &hellip; <a href=\"https:\/\/occamstypewriter.org\/mindthegap\/2009\/01\/15\/in_which_i_remain_precise_to_two_decimal_places\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":6,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-692","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/posts\/692","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/users\/6"}],"replies":[{"embeddable":true,"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/comments?post=692"}],"version-history":[{"count":0,"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/posts\/692\/revisions"}],"wp:attachment":[{"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/media?parent=692"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/categories?post=692"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/occamstypewriter.org\/mindthegap\/wp-json\/wp\/v2\/tags?post=692"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}