{"id":259,"date":"2009-05-11T20:08:49","date_gmt":"2009-05-11T20:08:49","guid":{"rendered":"http:\/\/occamstypewriter.org\/rpg\/2009\/05\/11\/on_whizzy_things_and_how_they_fall_apart\/"},"modified":"2009-05-11T20:08:49","modified_gmt":"2009-05-11T20:08:49","slug":"on_whizzy_things_and_how_they_fall_apart","status":"publish","type":"post","link":"https:\/\/occamstypewriter.org\/rpg\/2009\/05\/11\/on_whizzy_things_and_how_they_fall_apart\/","title":{"rendered":"On whizzy things and how they fall apart"},"content":{"rendered":"<p>Some might say there\u2019s no such thing as centrifugal force.<\/p>\n<p>\n<a href=\"http:\/\/www.xkcd.com\/123\/\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/imgs.xkcd.com\/comics\/centrifugal_force.png\" alt=\"You spin me right round, baby, right round, in a manner depriving me of an inertial reference frame. Baby.\" width=\"400\" height=\"595\" \/><\/a><\/p>\n<p>\nSuch people are probably not molecular biologists, cell biologists, nor any other kind of scientist who has to separate very small things on the basis of size, mass or density; or all three. Because when you spin something round it does tend to move away from the centre of spinnage. That\u2019s spinnage, not spinach. Thank you. And wet-wranglers know that heavier, denser things (quiet at the back, Steel) move faster under this force we call \u2018centrifugal\u2019. Even nuclear physicists have <a href=\"http:\/\/www.nrc.gov\/materials\/fuel-cycle-fac\/ur-enrichment.html#3\">worked this out<\/a>.<\/p>\n<p>\nNow the thing is, when you\u2019re trying to separate things that are very small, you tend to have to have quite a reasonable centrifugal force for this to work. And the smaller the size differential, the higher this force needs to be if you\u2019re to do it in a reasonable time. So if you\u2019re separating cultured mammalian cells from the trypsin solution, you spin at with a <a href=\"http:\/\/www.piercenet.com\/files\/TR0040dh4-Centrifuge-speed.pdf\">relative centrifugal force<\/a> equivalent to an acceleration 400 times that due to gravity (or <em>g<\/em> &#8212; not to be confused with <a href=\"http:\/\/network.nature.com\/people\/henrygee\/blog\">Gee<\/a>), for about two minutes. If you want to separate bacteria from their culture media, you\u2019re looking at about two <strong>thousand<\/strong> <em>g<\/em> for five minutes, or thirteen thousand <em>g<\/em> for thirty seconds. (It\u2019s not just a matter of real cells being bigger than bacterial cells: if you spin real cells too hard they tend to get a bit upset.) But when you want to separate F-actin from G-actin, it pays to be able to reach one hundred thousand <em>g<\/em>. You <em>can<\/em> do it at less, about twenty thousand, but then it takes half an hour to an hour instead of ten minutes. Let\u2019s not forget plasmid DNA from a solution of ethanol and acetate &#8212; sixteen thousand <em>g<\/em> for ten minutes is good, here.<\/p>\n<p>\nAnd the point of all this is that you need quite sturdy and expensive equipment. Consider a rotor that is about a foot across, developing thousands of accelerations due to gravity, spinning at say twenty thousand revolutions per minute (this is not uncommon for polymerized actin; or indeed caesium chloride density gradients, which I haven\u2019t done in 15 years because there are much better ways of getting the same result, but anyway). The circumference, or the distance travelled by a single tube in this rotor, is going to be \u220f \u00d7 0.3 m = 0.94 m. Call it a meter. It travels this distance 20,000 times a <em>minute<\/em>. That\u2019s 1,200 kilometers an hour. 745 mph. In other words, <strong>Mach 1<\/strong> (near enough). Which is why laboratory centrifuges &#8212; at least, the ones that go at a reasonable lick &#8212; are not only big and sturdy, but also evacuated (otherwise they\u2019d be much noisier, and hotter, than they already are).<\/p>\n<p>\nSo when I got an email from a particular ARC Australian Research Fellow saying<\/p>\n<blockquote><p>\nYesterday i discovered a fault with the Sorvall Evolution centrifuge on level 5 (floor-standing model). The &#8220;cone&#8221; upon which the rotor is seated had become partially dismantled.\n<\/p><\/blockquote>\n<blockquote><p>\nThis morning, i was alarmed to find that my &#8220;out of order&#8221; notice had been removed. Tape covering the start button had been removed and the centrifuge had been operated. Foolhardy and potentially dangerous<br \/>\nbehaviour.\n<\/p><\/blockquote>\n<p>\nI too was somewhat \u2018alarmed\u2019, if not \u2018gibbering\u2019, as well as \u2018grateful I\u2019d left the city, indeed the country\u2019. Now, I know the centrifuge in question, and although the lump of metal that makes up the rotor doesn\u2019t travel at Mach 1, it is a heavy lump of metal and goes bloody fast. And you\u2019ll all recall that E = &amp;frac12; m \u00d7 v&amp;sup2;. Which leads directly to this sort of <a href=\"http:\/\/network.nature.com\/people\/ennis\/blog\/2009\/05\/08\/hygiene-hypothesis#comment-36213\">metal fatigue<\/a><\/p>\n<p>\n<a href=\"http:\/\/www.chem.purdue.edu\/chemsafety\/NewsAndStories\/CentrifugeDamages.htm\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/www.chem.purdue.edu\/chemsafety\/NewsAndStories\/centrifuge1.gif\" alt=\"No Meester Bond, I expect you to die\" width=\"255\" height=\"340\" \/><\/a><br \/>\n<em>Flying metal fragments damaged walls, the ceiling and other equipment. The shock wave blew out the laboratory&#8217;s windows and shook down shelves.<\/em><\/p>\n<p>\nThe email was followed up by the safety officer, who informed us <\/p>\n<blockquote><p>\n[ARC fellow] is absolutely correct when he says not to operate an &#8216;out of order&#8217; centrifuge.This is very dangerous, and also could make an existing problem more serious and more expensive to fix.\n<\/p><\/blockquote>\n<p>\nwhich is slightly understating things.<\/p>\n<blockquote><p>\nNote also that NO-ONE should use one of these large centrifuges on any of the floors unless they have first been instructed in proper practice by the equipment\/room custodian, or a <strong>senior<\/strong> member of your lab who knows what they are doing.\n<\/p><\/blockquote>\n<p>\nThat\u2019s the MMB screwed, then.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Some might say there\u2019s no such thing as centrifugal force. Such people are probably not molecular biologists, cell biologists, nor any other kind of scientist who has to separate very small things on the basis of size, mass or density; &hellip; <a href=\"https:\/\/occamstypewriter.org\/rpg\/2009\/05\/11\/on_whizzy_things_and_how_they_fall_apart\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":1,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-259","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/posts\/259","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/comments?post=259"}],"version-history":[{"count":0,"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/posts\/259\/revisions"}],"wp:attachment":[{"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/media?parent=259"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/categories?post=259"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/occamstypewriter.org\/rpg\/wp-json\/wp\/v2\/tags?post=259"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}