{"id":394,"date":"2009-07-07T23:03:45","date_gmt":"2009-07-07T23:03:45","guid":{"rendered":"http:\/\/occamstypewriter.org\/scurry\/2009\/07\/07\/vital_supplements\/"},"modified":"2010-12-26T22:31:12","modified_gmt":"2010-12-26T22:31:12","slug":"vital_supplements","status":"publish","type":"post","link":"https:\/\/occamstypewriter.org\/scurry\/2009\/07\/07\/vital_supplements\/","title":{"rendered":"Vital Supplements"},"content":{"rendered":"<p>Those outside science are often surprised to learn that we usually have to pay for the privilege of being published. The charges incurred by authors, argue the journal publishers, reflect the cost of the significant value that added when a raw manuscript is converted into a scientific paper. And, at a pinch, I would tend to agree.<\/p>\n<p>I remember seeing my very <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/2372547?ordinalpos=3&amp;itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum\">first paper<\/a> appear in <em>Biochemistry<\/em> back in 1990. It was a magical moment. The bulky double-spaced manuscript of text, references, figure legends, tables and figures had been transformed into a slender, formatted paper. I can recall making my way to the library to seek out the fresh, green-covered issue of <em>Biochemistry<\/em> that contained my article. I don&#8217;t think I would go so far as to describe the paper as an object of beauty, but it was nevertheless for me a thing of wonder and joy. To see my words and graphs laid out pristinely on the page, in two regular columns with each table and figure neatly embedded in the text produced a moment of quiet fulfilment.<\/p>\n<p><a title=\"Graph by sc63, on Flickr\" href=\"http:\/\/www.flickr.com\/photos\/sc63\/3698435457\/\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/farm3.static.flickr.com\/2453\/3698435457_b2d4edf246_o.png\" alt=\"Graph\" width=\"400\" height=\"334\" \/><\/a><br \/>\n<em>Science (and history), in the making. From <\/em><a href=\"http:\/\/pubs.acs.org\/doi\/abs\/10.1021\/bi00471a020._\"><em>Biochemistry<\/em><\/a><\/p>\n<p>But that wasn&#8217;t all.<\/p>\n<p>An extra smack of satisfaction derived from the knowledge that, until that day, papers were things that I read, that I pored over and struggled to absorb. Always they were articles that had been written by <em>other<\/em> people. But here, for the first time, was something created by me. I had found something out and now it was being presented to the world. A once impossible mountain had been climbed.<\/p>\n<p>And I knew that my work had attained a kind of permanence (inasmuch as we may grant our civilisation that destiny). As part of the published scientific literature, the paper was indexed, catalogued and sent to libraries all over the world.<\/p>\n<p>That sense of magic remains, even 19 years later. I still love to get the galley proofs of each new paper  &#8211; there is a distinct sweetness to the first glimpse of the transformation of a raw manuscript into a peer-reviewed publication.<\/p>\n<p>These days of course, newly published papers almost immediately appear in <a href=\"http:\/\/www.ncbi.nlm.nih.gov\/pubmed\/\">PubMed<\/a> and are available for download across the planet (subscription or open access permitting). The advent of the Internet has also changed the type of information that can be published. No longer are we restricted to the published page or even to a fixed number of printed pages. These days we can add, affix, annex, append and augment. In a word, we can <em>supplement<\/em>. It is now common for a scientific paper to tow in its wake a great mass of supplementary online information. This provides a rich resource of additional text, images, sounds and video.<\/p>\n<p>Or, at least, it should do.<\/p>\n<p>Usually the added material consists of more text and figures than could be accommodated on the printed page and it&#8217;s a boon to be able to include it in the public record. But too often, alas, the magical &#8216;added value&#8217; of publication is lacking from the presentation of this supplementary information.<\/p>\n<p>What amazes me is that, despite the evident care taken over the paper, no-one seems to have given much thought to the way that the supplementary information is provided to the reader. As a case in point, I was reading a <a href=\"http:\/\/www.nature.com\/nature\/journal\/v437\/n7062\/full\/nature04084.html\">Nature paper<\/a> last week, in preparation for a review I&#8217;m writing and needed to track down the associated supplementary information. It was easy enough to <a href=\"http:\/\/www.nature.com\/nature\/journal\/v437\/n7062\/suppinfo\/nature04084.html\">find<\/a> but the vision that greeted me on the web-site was a crushing disappointment. There were no fewer than <em>nine<\/em> separate files to download. Nine!<\/p>\n<p><a title=\"SuppInfo by sc63, on Flickr\" href=\"http:\/\/www.flickr.com\/photos\/sc63\/3699245954\/\"><img loading=\"lazy\" decoding=\"async\" src=\"http:\/\/farm3.static.flickr.com\/2672\/3699245954_88b6117654_o.png\" alt=\"SuppInfo\" width=\"400\" height=\"344\" \/><\/a><br \/>\n<em>More or less? You decide.<\/em><\/p>\n<p>Six of the files were Word documents and three were pdfs. The information was a benign mix of words and figures but for reasons that are lost to me no-one had thought to combine them into a <em>single unit<\/em>. Or to integrate the information to make it more <em>accessible<\/em> \u2014 to put the figure legends with the figures, for example.<\/p>\n<p>I don&#8217;t mean to pick on the author (or the journal*) in this case, since my experience is that this fragmentation of supplementary information is fairly commonplace. There is presently a degree of chaos that we could do without; it is degrading the reader&#8217;s experience. But I am also worried that the random and proliferating set of filetypes being used to store supplementary information is undermining the permanence of the scientific record.<\/p>\n<p>I think we, authors and publishers, can do a lot better. With just a little supplementary effort.<\/p>\n<p>*<strong>Update &#8211; <\/strong> As Maxine points out in the comments below, the <em>Nature<\/em> stable of journals have made great strides since 2005 to improve the formattting of supplementary information that they publish.<\/p>\n","protected":false},"excerpt":{"rendered":"<p>Those outside science are often surprised to learn that we usually have to pay for the privilege of being published. The charges incurred by authors, argue the journal publishers, reflect the cost of the significant value that added when a &hellip; <a href=\"https:\/\/occamstypewriter.org\/scurry\/2009\/07\/07\/vital_supplements\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":7,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[1],"tags":[],"class_list":["post-394","post","type-post","status-publish","format-standard","hentry","category-uncategorized"],"_links":{"self":[{"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/posts\/394","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/users\/7"}],"replies":[{"embeddable":true,"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/comments?post=394"}],"version-history":[{"count":0,"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/posts\/394\/revisions"}],"wp:attachment":[{"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/media?parent=394"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/categories?post=394"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/occamstypewriter.org\/scurry\/wp-json\/wp\/v2\/tags?post=394"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}