The shove that dare not speak its name

The following is a commentary that has been published today (in a slightly edited form) in Chemistry and Industry.

Only the excellent need apply. Such is the message on research funding from nobelist Sir Paul Nurse, incoming president of the Royal Society. It is a message echoed by the Wellcome Trust — a major funder of the medical and life sciences in the UK — which has abandoned project and program grant support in favour of an investigator award scheme. This will offer generous long-term support to “the brightest researchers with the best ideas”. These grants will be a boon to anyone who gets one but Wellcome has acknowledged that they will be funding fewer individuals than under their previous arrangements. David Delpy, Chief Executive of the EPSRC appears to favour a similar approach.

Science funding in the UK is already highly competitive, with only around 20% of grant applications being awarded. This new emphasis on excellence seems likely to make the competition even more intense. Who could argue with the drive for excellence? Excellence is good. Excellence is right. But excellence can be hard to judge and no review process claims to be perfect. What happens to the excellent scientists who fail to win an investigator award? What about scientists who sacrifice some research effort for the sake of excellent teaching?

Although I am not privy to the internal machinations at the Wellcome Trust, I suspect the switch to investigator-based funding is due in part to the finding that their fellowship and program grants produced papers with more citations than shorter-term project grants. But while project grants may be worth less by this relatively crude estimation, that doesn’t mean that they are worthless. In fact, project grant research accumulated two-thirds the number of citations of Wellcome research supported by longer-term funding.

And yet, implicit in the drive to fund fewer ‘excellent’ scientists, is the calculation that anyone else is unworthy of support and can be shoved aside. The problem with this approach is that it does not take proper account of the heterogeneous ecosystem that supports scientific research in the UK.

No-one denies that competition is a good thing. Though most scientists are strongly self-motivated, we all benefit from that external driver. But the system of research funding is out of balance, especially in regard to university-based science. The stable, long-term funding that Wellcome — and perhaps the EPSRC — will offer through their investigator-based schemes will undoubtedly yield productivity boosts in winning labs. But the gains of a few will be won at the expense of those who lose out in the competition. The increased numbers of scientists refused funding by Wellcome will necessarily turn to the Research Councils, pressurizing a funding system that is already creaking, at a time when the UK science budget is declining. Success rates in Research Council applications, already low, will dip further; the work and time expended on unsuccessful applications will increase. It is a recipe for inefficiency.

These tremors in the funding landscape will be exacerbated by the Government’s plans for large increases in university tuition fees, a shift that places further strains on university-based academics because students will quite naturally expect more teaching and contact time in return for the higher price paid for their undergraduate education. I see little evidence that the implications of all these changes have been thought through in the upper echelons of government or funding agencies. In discussions with my colleagues over the past several months, I have met no-one who looks to the future with enthusiasm or optimism. I have met many with a diminished sense of satisfaction in their scientific work. It is becoming a treadmill.

All scientists, if they are to be productive and innovative, need the time to speculate, to think, to plan. But with funds increasingly concentrated in a few labs, the capacity of the remainder to generate the data needed to support grant applications or to take the experimental risks that push at the boundaries of knowledge will be lost as they are forced to spend more and more of their vanishing time chasing money.

Since there is recognized value in stable, long-term funding, why not offer it to the many and not just the few? A system that offers increased stability could well reap major productivity boosts. A scheme that would, for example, fund at least one research assistant or technician post for every tenured university scientist — perhaps to be reviewed or adjusted every 5-7 years according to productivity — would smooth out many of the stresses and strains of the current system. The wildly oscillating levels of funding that many labs have to cope with as a result of the uncertainties of the application process often prevents them from maintaining continuity of staff or effort that is so vital for the conduct of quality science. If that steady funding were to be offered in recognition of commitment to teaching, universities would do a better job of balancing the demands on their staff.

Competition is good and valuable, but not at the expense of everything else. It is important to remember that the UK scientific enterprise consists of more than just the research done in the very top labs, and that science is done by men and women who appreciate being valued and supported.

Posted in Science, Science & Politics | Tagged , , , , | 42 Comments

The Importance of Being Confident

The government is worried about the economy and rightly so. It’s in a bit of a state.

When Value Added Tax was raised by 2.5% to 20% at the turn of the year, there were nervous glances to see what impact it might have on consumer confidence. The VAT increase was probably carefully calculated to ensure that people out shopping would not be deterred from their purchases, so that the consumption merry-go-round would keep on turning.

The government’s concern for the economy is also behind its reluctance to bite the hand of bankers, who are awarding themselves generous bonuses just as the rest of the country public is beginning to feel the pain of spending cuts brought on by their failures. Banking is important so we all have to pay. Despite the massive problems in caused by the banking sector in the past couple of years, it is considered vital for the health of the economy that bankers — and other industrialists — remain confident that the UK is a good place to do business and to make money.

It may be galling but there is probably a lot of truth in this*.

Without confidence, there is no future. It’s not worth investing or planning or working if you can’t be sure that you will get a decent return. That much is obvious but, as a scientist, I couldn’t help being a little envious of the concern the government so obviously feels about the confidence levels of consumers, bankers and industrialists.

Perhaps I’m being over-simplistic, but the message to scientists seems to be of an entirely different tone. Scientists in the UK must learn to do “more with less” in Vince Cable’s famous phrase. With funding levels dipping below 20% and likely to fall further as the value of the UK science spend declines in real terms, more and more scientists can expect to feel the pain and frustration of failure. The mood among my colleagues, leavened temporarily by the realisation that the cuts to the science budget were not as great as feared, remains grim. Confidence is slipping and, with each rejected grant proposal, it is only going to get harder to galvanise yourself to re-apply. Many of us are trying to balance teaching and research workloads, but I haven’t met anyone lately who claims to have achieved a sense of equilibrium.

Oddly, while the sin of mediocrity is easily forgiven (if not rewarded) in banking, scientists are being held to a different standard. It is of course quite right that applications for public funding of science are sifted rigorously — there is never a case for mediocrity (and of course many businesses feel the heat of competition every day) — but it is important also to ensure that the system works, and that the people within it have the confidence to carry on.

The government may be fretting about the confidence of consumers and bankers but I suspect their concern for the confidence of scientists is less intensely felt, and it is therefore in danger of ebbing away.

Confidence building has to work at many different levels (as recent posts by Athene and Jenny have made clear). The government might argue that the settlement achieved in the Comprehensive Spending Review was a solid vote of confidence in science. But I am thinking more of the scientific community. The Research Councils set themselves strategic priorities to address the nation’s technical ills — food security and ageing are two identified by the BBSRC for example — but why not make building the confidence of the scientific community a strategic goal? What measures might they take to help ensure continuity of funding in labs trying to negotiate the poker tables of the funding process (set to become even more tense in the life sciences now that the Wellcome Trust has decided to concentrate funding on fewer individuals).

But we should also be able to help ourselves. Staff support is important at faculty and departmental levels in our universities (though I suspect provision is uneven). In turn, lab-heads have a duty to support the people working with them, not just through technical training but with positive encouragement. I’m not sure how good I have been at this myself over the years, but I think I’m learning.

And as a community of scientists we can support each other more informally. I have often felt boosted in meetings and at conferences by the friendly nature of our shared interest in making sense of the world; the same is true — though the effect is somehow not as intense — of connections made through blogs and other social media. Across the country and across the world scientists are feeling the stress and pain of hard economic times. At the moment we may be in the gutter, but if we find ways to stick together, we can be more confident of glimpsing a hopeful star**.

 


*I am no economist – happy to be taken to task for the shallowness of my analysis.

**Apologies to Oscar Wilde.

Posted in Science, Science & Politics | Tagged , | 10 Comments

Burying Pigs and Information

Ben Goldacre wrote a short blogpost today to bemoan the habit of many media outlets of not linking to the primary sources for their reports and headlines. He was referring to stories that have appeared today about Asian gangs abusing white girls (e.g. this form the BBC). In typically trenchant terms he dismisses such shoddy reporting, “If you don’t link to primary sources, you are dead to me.”

I sympathise. I came across what appears to be a shocking story on the Sky News web-site. The headline states bluntly: “South Korea Buries One Millions Pigs Alive”. But I can’t figure out if it’s true.

The report, dated 7th Jan, is accompanied by a couple of gruesome photographs and makes for unpleasant reading. South Korea has been suffering from an outbreak of foot-and-mouth disease (FMD) since 29th November 2010.  FMDV, the virus that causes the disease, is extremely contagious and infects cloven-hooved animals such as pigs, cattle, sheep and goats, the mainstay of animal farming.

The very rapid spread of the virus demands swift action on the part of the national governments. Korea can no longer trade in livestock or meat products with the rest of the world. Its agricultural economy is under severe threat: the cost of this outbreak will run into hundreds of millions of dollars.

The government has two choices – to vaccinate or to cull* and the Koreans have opted (as did the UK in 2001 and 2007) to control the outbreak by mass slaughter. But what is extraordinary here is the apparent decision to kill infected animals (and many that simply might be infected) by burying them alive in mass graves. This is a brutal practice that is in contravention of the guidelines on animal slaughter from the OIE, the World Animal Health Organisation.

If true, the reports of live burial are abominable. But it is hard to track down the truth.

Sky News says only that “South Korea has been heavily criticised for burying up to one million pigs alive as it grapples with a foot and mouth disease outbreak”. It is not clear where the figure of one million comes from. The Daily Telegraph quotes the Korean Agriculture ministry as saying that 1.1 million animals have been culled (that’s a staggering 8% of the pig and cattle population, by the way) but the paper makes no mention of live burial.

The Sky News report implies that it is the Compassion in World Farming (CIWF) that has been critical of the practice of burying live pigs in Korea and includes a link to a CIWF web-page. But that page states only that, “It is reported that 2,400 pigs have been buried alive in the Republic of Korea” and gives no indication of the source of the information.

After digging around I came across the web-site of another animal welfare organisation, KARA (Korean Animal Rights Advocates), which carried a report that seems a more likely source for the Sky News story. It’s the most detailed account that I have found and includes descriptions of some of the culls and reports of the psychological trauma that the process is inflicting on the human participants. It also links to a Korean site that has photographs that convincingly show pigs being herded, with the aid of a mechanical excavator, into an open pit.

These elements of the KARA report appear credible. But, although it also states that 90% of the 1 million animals killed have been buried alive, this very serious claim is not substantiated. Yet again, there is a missing link.

And there the trail has run out – for now.

Maybe the Sky News report is true. But what’s troubling is that I had to work so hard to try to figure out if there was any real substance to it** and that, even then, I can’t be sure. So I agree with Dr Goldacre — if you don’t link to primary sources in your reporting, it’s a dead loss.

 


Footnotes

*This is a difficult choice. FMDV vaccines are available but it can take 1-2 weeks to get animals into a protected state, arguably too slow to prevent spread of the disease.

**I also tried checking up at the OIE web-site, which is tracking the course of the outbreak (FMD is a notifiable disease, meaning that all nations must immediately report the occurrence of an outbreak and keep the OIE informed of its progress and control). Helpfully, OIE provide weekly tallies of the numbers of animals that have been killed since the Korean outbreak started on Nov 29th. But some of the numers in their tables were suspiciously round and, unless I have made an error in my addition, their tally of dead animals up to 7th Jan 2011 was only about 240,000, well short of the 1.1 million figure attributed to the Korean Agriculture Ministry.

Posted in Science, Science & Media, Science & Politics | Tagged , , | 17 Comments

Padding times three

Henry started it by banging on about his iPad. Somehow the subject of blogging came up and I mentioned the BlogPress app, so here I am testing it out. I used it once on MT4 but this is my first go on WordPress.

Seems OK so far…

Second, what exactly is this thing called Quora?

I came across it on Twitter earlier in the week and, like a social media addict, signed up straight away. Quite a few other people seem to have done the same thing. I’m not sure any of us knows what we’re doing.

The basic idea is that it’s a Q & A site. It seems a bit more serious in intent than Twitter (which is often used for Q & A or ‘crowd-sourcing’, as public querying is called by the little blue bird). Quora will check the grammar and intelligibility of your question before allowing you to post. So watch your language.

I’ve not done much yet but the very first question I posed elicited a useful answer. Following a comment I made on Henry’s post about the lack of a decent molecular graphics application for the iPad, I asked on Quora if anyone knew of one. I am keen to be able to display protein structures on my touchy tablet. I wasn’t too hopeful since I’d already searched on Google but within an hour two people had pointed me to CMol.

I haven’t had a chance to play with the program yet, so i will reserve judgement. But I can already tell it’s more useful than the somewhat limited Molecules app.

I took a picture to give you an idea (don’t fret about the details – it’s just the cluttered innards of a poliovirus protein):

And thirdly, late this afternoon I was very pleased to learn that one of my posts from last year was selected for inclusion in Open Laboratory 2010 – the anthology of the best writing on science blogs. The selected post recounts my first sighting of Jupiter.

Far out.

Posted in Blogging, Fun, Protein Crystallography | Tagged , , | 4 Comments

Joule’s Jewel

For the longest time I thought he was French. It’s the name — Joule; it sounds French and in my physics class at school no-one thought to explain otherwise. In fact, Joule was not even introduced as a name — the word was simply handed to us as the SI unit of energy, a replacement for Calorie who, for all I knew, might also have been from France.

Many years later, long after I had completed my schooling and a degree in Physics, I was surprised to discover that James Prescott Joule — to give him his full name — was from Salford, near Manchester. He remains a slightly elusive figure to me since I haven’t yet got hold of a biography, but he is starting to take shape, more so since my latest visit to London’s Science Museum.

JP Joule and apparatus

It’s a shame that histories and biographies are so often omitted from science classes, since the human story of how concepts developed can make them more accessible. This seems especially true of the more abstract ideas of science, which too many assume to have popped, ready-formed, from the mind of some genius. Joule was no genius; if anything, I get the impression that he was a bit of a plodder. But fortunately he was a tenacious, meticulous and insightful plodder.

Joule’s main interest was thermodynamics which as a subject has a reputation for being difficult and boring, even among physics students who have opted to grapple with its abstruse state functions — heat, enthalpy, entropy and such-like — and the seemingly endless differential equations that relate them to one another. But thermodynamics is more important than most of us (and most physics students) realise because it connects our everyday experiences to the underlying atomicity of the world and helps us to make sense of energy, a term much abused by the other-worldly but one which, thanks in part to Joule, has a well-defined meaning in science.

I was reminded of the Salford scientist by a chance encounter at the Science Museum with the apparatus that he used in his most famous experiment. I nearly missed it as I passed through the ground floor gallery at the Science museum a few weeks back, on my way with my daughter to see the fabulous Hubble 3D film in the IMAX cinema, but there, in a floor-level glass cabinet surrounded and dominated by the giant locomotives of the steam age, sat an unprepossessing piece of worked brass that had helped to extract a golden nugget of science from those engineered monsters. With that small canister and those rotating paddles, Joule showed the world that work and heat are equivalent. My daughter gazed patiently at the ceiling as, smiling, I flitted around the cabinet taking pictures.

Joule's apparatus and steam engine

So work and heat are equivalent; it doesn’t sound like much. To most of us perhaps the notion is so obvious that any sense of its achievement has vanished. But eighteenth and nineteenth century science had struggled for a long time to grasp the imponderable quantities that were light and heat and electricity and magnetism. Joule wasn’t the first or the last to think deeply about them but his careful experimentation was crucial to crystallising our modern understanding. In part, he took his cue from Count Rumford, a delightfully colourful figure whom I’ve written about before, and whose cannon boring experiments skewered the caloric theory of heat and pointed to the link between the force of friction and the generation of heat.

Like Rumford, Joule wrote an accessible account of his experiments for the Philosophical Transactions of the Royal Society, but the styles of the two men could not have been more different. Joule’s report, ‘On the Mechanical Equivalent of Heat’,  which was published in 1850*, has none of the egotistical exuberance of Rumford’s rollicking tale. It is measured, plain-spoken. But the ordinariness of the prose and the simplicity of the experiment are deceiving. I think Joule’s paper is a gem as lustrous as any worn by the preening Count.

To begin with, Joule is fastidious and gracious in his acknowledgement of those whose work led science out of the blind alley of caloric theory to the point where he could conceive of an experiment to measure the equivalence of heat and work “with exactness”. He mentions not only Rumford, but Davy, Dulong, Grove, Séguin, Faraday and even the luckless Julius von Mayer (who, depressed by the lack of recognition of his work and in dispute with Joule over priority, attempted suicide in 1850)**.

All of these men had been groping their way to a realisation that, in various ways, the application of forces to solid, liquid and gaseous bodies caused them to heat up; and that heat was, in effect, the energy transferred to the body by the efforts of friction or compression or even electrification (which Joule linked to the force of chemical affinity in a battery). He even notes:

“there were many facts, such as, for instance, the warmth of the sea after a few days of stormy weather, which had long been commonly attributed to fluid friction.”

So the idea was there. But it was resisted. Joule notes at the end of his introduction that, despite the accumulating threads of evidence in favour of the relationship between work and heat:

“the scientific world, preoccupied with the hypothesis that heat is a substance, and following the deductions drawn by PICTET from experiments not sufficiently delicate, have almost unanimously denied the possibility of generating heat in that way.”

It was Joule’s singular insight that exact measurements were the necessary foundation to convert the idea into a scientific theory, or better yet, a law of Nature. The experiment he designed for these measurements was elegant in its conception, but required all his imaginative power to execute it with precision.

Brass paddle wheel and vane assembly

The paddle wheel and vane assembly

The apparatus was straight-forward: a set of brass paddles immersed in water were linked by two pulleys on either side to heavy weights. As the weights dropped through a measured distance to the floor, the paddles rotated between fixed vanes and agitated the water. The weights were wound back up again and the process repeated.

The temperature of the water was measured at the beginning of the experiment and then again after twenty falls of the weights. The total increase in heat was calculated by multiplying the observed temperature rise — typically about 0.6 °F — by the combined heat capacity of the water and the brass apparatus. The work done was determined by multiplying the combined weight (in pounds – lbs) of the two lead discs by the distance (in feet – ft) that they fell to the floor.

Diagram of Joule's experiment

Joule's diagram of his experiment

There is nothing terribly sophisticated about the experiment but the wonder of it is in the heroic care Joule took to control and correct his measurements.

He engineered the apparatus to reduce the friction of any moving parts and fixed it on a wooden mount designed with as few points of contact as possible, so that any loss of heat through conduction would be minimised.

He shielded the apparatus from his own body heat with a large wooden screen but even so, took care to do controls in which he went through the entire motions of performing the experiment but without moving the weights or the paddle, and measured the resulting temperature rise (which averaged at a minuscule 0.012975 °F).

He measured the room temperature at the beginning and end of each experiment so that he could determine how any difference with the apparatus was affecting the results (this required a correction of -0.000832 °F).

He determined the net weight of the leaden discs (406152 grains (grs.) — or 26.318 kg) by subtracting the frictional resistance of the pulley wheels of the apparatus, which he measured to be equivalent to a weight of 2837 grs, an adjustment of 0.7%.

He measured the speed of the falling weights, which dropped at 2.42 inches per second, and subtracted the kinetic energy of their motion from his determination of the total work (weight times height fallen) to find the work that had been expended only on heating. Effectively this entailed reducing the total distance dropped (1260.248 inches) by 0.152 of an inch.

He repeated the experiment and each control run forty times.

And then he did it all again.

But the second time he used mercury as the frictional fluid instead of water. This alteration required an additional step in which the vessel containing the mercury was immersed in water immediately upon completion of the twenty drops of the weights so that the heat accumulated could be measured by its effect on water. The mercury experiment, each time accompanied by a control run, was repeated twenty times.

And then he did it all again.

This last time he mimicked Rumford by having the falling weights turn one disk of cast iron against another, while immersed in mercury. As previously, the whole apparatus was dunked in water at the end of each run to measure the heating effect of the friction. This was repeated, with controls, a sum total of ten times.

By three different experiments, using three different media — water, mercury and iron — Joule found the heating effect of the work done by the falling weights to be the same value to within less than one half of one percent. Consideration of the process and number of repetitions of each experiment persuaded Joule that the trials performed with water had provided the most accurate determination and so he concluded:

“That the quantity of heat capable of increasing the temperature of a pound of water by 1° FAHR., requires for its evolution the expenditure of a mechanical force represented by the fall of 772 lbs. through the space of one foot.”***

The conclusion is prosaic, almost cumbersome. But through imagination, through meticulous care, through long, repetitious hours in the laboratory Joule pulled an idea out of the ether and gave it the substance to overcome the prejudices of men.

Thus did the first law of thermodynamics, which had actually first been enunciated by Mayer in the early 1840’s but then resisted by many in the scientific community, even in the wake of the early reports of Joule’s experiments, make its tortuous entry into the scientific mainstream. Mayer’s rendition — let me give him the last word — is indistinguishable from the modern equivalent: “Energy can neither be created nor destroyed.”

Our scientific understanding, in contrast, most definitely has to be created.

 


Footnotes and Bibliography:

*The 1850 paper by Joule is in fact a recapitulation of a series of experiments that had started in several years previously; his initial results were first published in the Manchester Courier, which was an unusual destination even at that time.

**Joule’s words on Mayer appear to be especially carefully chosen, probably because his 1850 paper was written after the dispute with the German physician and physicist had erupted. He writes, “The first mention, so far as I am aware, of experiments in which the evolution of heat from fluid friction is asserted, was in 1842 by M. MAYER, who states that he has raised the temperature of water from 12°C to 13°C., by agitating it, without however indicating the quantity of force employed, or the precautions taken to secure a correct result.” I haven’t been able to get hold of Mayer’s paper (published in Comptes Rendus, t. 25, p. 421) but suspect there is some justification for Joule underscoring the point about the need for scientists to report the details of their experiments.

***The result obtained by Joule is within one percent of the modern value.

See also: Science, A History 1543-2001, John Gribbin (Penguin Books), p382-388.

Posted in History of Science, Science | Tagged , , | 17 Comments

Snapshots of 2010

I wasn’t going to do a review of the year’s blogposts but, on the off-chance that the recent move to the shiny new site at Occam’s Typewriter has attracted some new readers, I thought I would provide a brief guide to my personal favorites of 2010.

Platonic Solids

To amuse those who have had quite enough words from me this past twelvemonth thankyouverymuch, I have interspersed the text with photographs taken in 2010 — the ones that distracted my eye in an abstract sort of way.

Buckets (of blood?) on HMS Victory

The year kicked off with the gift of a telescope, which gave me my first magnified and magnificent views of the heavens. I delighted in getting to know the moon and other planets and later, under dark Cumbrian skies, was excited to be able to see even further afield.

Needles

But protein molecules of course are my first love and this year I wrote about two of my favourites. I recounted the story of Max Perutz’s study of haemoglobin, which had inspired me to take up crystallography, and then described the disarmingly named La protein, a subject of my own research.

Venice windows

Though pleased to have maintained a fairly steady level of output on my blog through the year, the day job in science remains my number one concern. Back in May I reflected on the trials of judgement that scientists must endure, from both sides of the bench. One who is ever ready to rush to judgement of science and scientists is the Guardian columnist Simon Jenkins. With Bill Hanage I wrote in February to seriously contest Jenkins’ faulty assessment of the scientific enterprise. Jenkins popped up again with more nonsense in June and this time was taken to task much less seriously, as part of the delightful #SpoofJenks campaign (sparked by Jon Butterworth and Jenny Rohn).

Sky Angel

Those weren’t my only brushes with judgement since I had been closely following the libel case brought by the hapless British Chiropractic Association against the science writer Simon Singh. Singh had had the temerity to question (rightly, as it turned out) the BCA’s claims to be able to treat childhood ailments such as asthma by manipulation of the spine. In following the case I made my first, fascinating visit to the High Court, and managed to snag tickets for the Big Libel Gig, organised to raise funds for the ongoing campaign for libel reform. Happily, justice was eventually served and I was glad to have the opportunity to examine the judgement as a guest post for Jack of Kent.

DNA Buillding

Elsewhere in the public domain, the arrival of the coalition government heralded much nervous speculation about the direction of the new government’s science policy. At the Royal Institution in July I thought David WIlletts gave some rather mixed messages, whereas Vince Cable, speaking later in the summer at QMC, was disappointingly confused.

Waterstone

Cable’s speech sparked the Science is Vital campaign that absorbed a huge effort from several of us round here in September and October. It gave rise to my first two experiments with audio, one a disquisition on Patrick Blackett and the other a rather breathless report about the campaign’s lobby of Parliament. In two other posts I tried to work out for myself the case for science funding, one for The Scientist (hat-tip to Richard for commissioning and editing) and the other composed as a letter to my MP. The whole campaign was energising and draining; once I’d had a chance to recover, I was able to reflect on its success and look forward to what it might bring in 2011.

Party People

The Science is Vital campaign wasn’t the only episode of exhausting excitement that I experienced in 2010. How could I forget the thrill that was the “I’m a Scientist, Get Me Out of Here!” competition, which had me working every spare minute to satisfy the curiously of hordes of schoolchildren from around the country. I’ve said it before and I’ll say it again (and this isn’t just because I won!) — it’s a fantastic experience and I urge any scientist (PhD students and older) to get involved next year.

 

Transparently Opaque

Science is only a part of my life but it is a source of great enrichment, especially at the intersection of other facets of human culture. I started running in 2010, which brought me — perhaps a tad circuitously — to an appreciation of the artistic and analytical works of Eadward Muybridge and Anish Kapoor (a guest post thanks to GrrlScientist). 2010 was also the year in which I finally made the intimate acquaintance of Jacob Bronowski’s magnificent BBC documentary, The Ascent of Man.

Wing and Wonder

Bronowski’s program was the best television I saw all year. The best science book I read was Rebecca Skloot’s wonderful tracking of the human source of HeLa cells in The Immortal Life of Henrietta Lacks.

Crystal

And finally, because I couldn’t place it anywhere else, I seem to remember writing a post  on the eternally bemusing topic of homeopathy.

I wonder what 2011 will bring? Happy New Year to all!

Posted in AltMed, Astronomy, Blogging, History of Science, Libel Reform, Protein Crystallography, Science, Science & Politics, TV review | 5 Comments

Festive Tech

It’s Christmas Eve and the Curry household is getting ready for the big day. All the shopping is done and work has been put aside for a couple of days.

Now I can turn my mind to the serious business of recording the festivities. This is not something to be undertaken lightly. I am charged up and ready to go — as you can see:

Camera Gear

Also lurking in this photograph is evidence of one or two events and discussions that took place online and offline recently. Can you spot any? (They’re a bit cryptic: only Austin will be able to get one of them and people outside London are unlikely to get any of the others. )

While you set about pondering, let me wish you all a Merry Christmas and a very happy 2011!

Posted in Technology | 10 Comments

Sixes and Sevens

It’s all been rather unsettling but I guess that’s life these days.

Moving the blog to its new home was a bit more fraught than I had been anticipating. Though I can piece together a rationale for Nature Network’s rather precipitate decision to change the locks, I’ve not really had a satisfactory explanation from them for their actions. I have been surprised at how disturbing this has been to me over the past week but I guess it will come soon enough to be seen as a trivial episode.

Time to unpack

In the meantime there is the physical and technical reality of moving the blog to cope with. It’s a bit like moving house. If you look down the side-bar on the right hand side you will see that I have imported my archive of blogs from Nature Network. However, as with moving house, dumping the boxes in your new living room is not the end of the job. You still have to unpack them and that’s what I’m now trying to sort out.

My more recent posts — those written since March 2010 when Nature Network switched to Movable Type 4 — were imported more or less smoothly but earlier ones are still wrapped in a heavy layer of Textile markup code, making them a bit ugly to look at. So I suggest you don’t, at least for the time being.

I am on the case but it may take a little time to sort this out. If you have expertise in Textile to HTML conversion I’d be glad to hear from you.

At the lab, where the science is supposed to be happening it has been a difficult time. Few will be unaware of the redundancies announced by the Department of Life Sciences at Imperial College where I work. Though not affected most directly, those of us who remain on the staff are inevitably perturbed by events of this kind. (I hope it will be obvious that I cannot discuss the specifics of the situation here.)

In the midst of this I am trying to write another grant application. Of necessity — I won’t bore you with all the other things that I have been trying to get done — this one has come together rather late in the day and I am unsure whether I can meet the 5th January deadline. Going for it will mean a major disruption of Christmas with my family. Having messed up Easter with an earlier application, I am reluctant to put them through the same thing again. But needs must. Mustn’t they?

In the few quiet moments that I can snatch on my commute I have recently been reading Greg Petsko’s column at Genome Biology, which is available as an eBook for Kindle, iPad or iPhone.

Petsko is a protein crystallographer (like myself) and works at Brandeis. I was already aware of his scientific output. Indeed, I suspect we probably sat in the same seminar rooms while I was working in Boston in the 1990s. I only came across his column recently when a piece (A Faustian Bargain) that he had written as a letter attacking the decision of the President of the State University of New York at Albany to close several of its humanities departments was flagged up on Twitter. It was articulate, passionate and struck a chord with many people.

From there I found my way to his back catalogue and have gone all the way back to 2000 to start from the beginning. Although I found his Faustian Bargain letter a little overblown, I have warmed to the easy style and clear intelligence of his writing. I’ve not read many yet, so I may eventually tire of articles that have to maintain some link to genomics. But so far so good.

A column entitled Perpetual Motion of the Worst Kind seems particularly relevant to some of the malaise I am experiencing:

“If I could change one thing about modern science, it would be this constant busyness. It robs us of so many things: the peaceful contemplation of our results; the time to get to know our students better; the challenge of planning an experiment carefully instead of just rushing to get more data; the simple joy of working with our own hands. It exhausts us, emotionally as well as intellectually and physically. And genomics is only going to make it worse, if in no other way than simply by increasing the pressure for more results, faster. If we don’t do something about it soon, we will wake up one morning to find that science has become work instead of fun. (And personally, I’ve never wanted to work for a living.)”

Posted in Science | 25 Comments

Arsenic up for Review

This amused me. It might amuse you too.

The other night Ed Yong asked on Twitter if anyone could remember mention in a recent blogpost of the fact that salts of arsenic often contain phosphate. I’m guessing he was preparing for his latest #arseniclife post (which — to be serious for a second — is refreshingly candid about his initial treatment of all this arsenic-munching bacteria brouhaha). I thought I had read a note about the phosphate content of arsenates on Rosie Redfield’s blog, but I was mistaken.

Then I wondered about looking up sodium arsenate on the web-site of Sigma-Aldrich, purveyors of fine chemicals to the world’s scientists. I remembered that they often included analyses of the most common contaminants of their products. The page I got to is shown below — unfortunately it doesn’t report on the contaminating salts.

But it does reveal something quite interesting.

SA-arsenate

Sigma-Aldrich have gone a bit, um, Amazon. You will see towards the top that the site invites you to write a review.

This was too much for my imagination. I couldn’t resist:

What a great product! Had been feeling peckish and was delighted to come across this product at Sigma-Aldrich.  Was impressed with the speedy delivery and the quality of the salt. Really great taste with none of the nasty phosphatey residue that you get with cheaper products. Shared it with my buddies at the lake who all agreed it was awesome!

GFAJ-1 (and the gang)

And not only do Sigma-Aldrich want reviews; they are now also suggesting additional purchases based on your selection. At first this seemed a bizarre innovation for a site dedicated to hard-working, focused scientist shoppers. But then I wondered what would be the impact if Sigma-Aldrich were to adopt a random chemical selector to generate these suggestions? Who knows what uncharted zones of chemistry might be discovered!

Posted in Fun, Science | Tagged , , | 29 Comments

Moving On

Hi All – this is just a short placeholder post for anyone who may have wanted to leave a comment about my farewell post at Nature Network, which is now up.

I’m afraid I am unable to respond to comments there, so thought I’d make a space here.

Posted in Blogging | 8 Comments

Moving On (NN)

The time has come to say goodbye to Nature Network. I am moving Reciprocal Space to at new site at Occam’s Typewriter, which launches today.

In part, to be perfectly honest, the move is motivated by the frustration accumulated in the transition to MT4 and other problems that have been aired thoroughly in the discussion threads and don’t need to be revisited today.

But for me it is largely a positive move to a new blogging venture that, while certainly centred on science, will not be tied to that subject. I also hope that we will be able to develop Occam’s Typewriter as a platform that will reach beyond NN’s core audience — the community of professional scientists.

I want to thank Lou and Matt for all the efforts they have made to resolve our technical problems over the past months and to fight the bloggers’ corner within the much larger enterprise that is Nature Publishing Group. I also particularly want to express my gratitude Matt for giving me the chance back in September 2008 to test my blogging mettle. The last couple of years have been a tremendously interesting journey. In a way, it has been the making of me!

I’m not withdrawing altogether. I remain a member of Nature Network and will try to contribute a comment or two, as the fancy takes me in the months and years to come. But if you have enjoyed some of my verbal wallowings on this blog, allow me invite you to take a look at Reciprocal Space in its new home:

https://occamstypewriter.org/scurry/

Best wishes to all.

Stephen

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Time Travel

“Ladies and gentlemen, welcome to Dublin Airport,” says the pilot. “Please remember to turn your watches back thirty years.”

So goes the time-worn joke but last weekend that’s more or less exactly what I did. I flew to Dublin to hear a band I first saw in concert in the summer of 1977 when I was just thirteen years old.

It was a little bit crazy but I’m glad I went — I was not the least bit disappointed. But I’m not sure why I’m writing about the experience because I don’t think I can explain to you why this band and their music appeals to me so much. At least not in a way that will make you feel the same way.

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Horslips are not well known outside of Ireland. I’m guessing that most readers here will never have heard of them. The band came together in 1971 and established a unique style of prog rock that fused traditional Irish music with good old rock’n’roll.

Several of their records, notably The Tain and The Book of Invasions, are concept albums that draw on folk legends. Others have songs with titles like King of the Fairies or Furniture. They play electric guitar, bass, keyboards and drums. And the violin. And the flute.

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It might sound like a recipe for disaster, but it isn’t — not for me. Furniture lasts more than fifteen minutes on their 1976 live album and is one of my favourite tracks. To some it might sound as self-indulgent as I find longer pieces by Pink Floyd, but to me it is magical. I was delighted that they played it last Saturday night. The albums Aliens and The Man who Built America are about the experience of emigration, and I guess that is something I can relate to.

I saw the band only once, in that summer of ’77 at an international scout camp of all places. It was my very first live concert. By 1980 they had split up and I lost my chance to see them again. But I kept the flame of fandom alive with records and cassette tapes and, later, CDs ripped to my iPod. Maybe you have to be Irish to like them, to overlook the odd piece of weaker song-writing or the occasional limitation of the singing. I don’t know. I’d like to explain but I can’t. I guess our response to music is not just about an appreciation of the sound. All I know is that Horslips have been in my musical blood for a very long time.

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And so I found myself in Dublin last weekend with my brother, his wife and their friends — immersed in a past that was over thirty years old. The sense of history was heightened when I ran into my cousin, whom I’d not seen since 1992, and an old school-friend whom I’d last talked to on a previous jaunt to a concert in Dublin. In 1986.

But the years fell away as the music started and I pushed my way to the front.

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P.S. If you’re looking for the science in this post, look again. No wait – that was a joke. This wasn’t quite what I was planning for my first post on Occam’s Typewriter but, through force of circumstances, it’ll have to do. If you’re desperate for a scientific angle, consider this: even scientists can make fools of themselves at rock concerts in their forties.

Posted in Music | 11 Comments