On religion

(I speak for myself. Although I am employed by Faculty of 1000 (F1000) and this post is about the company, I am not writing on behalf of F1000: this is my opinion only.)

Somewhere on the internets the other day I came across a comment about Faculty of 1000, written by one of our (erstwhile) Faculty Members. At least I assumed it was a Faculty Member: the gist of the comment was that he was no longer participating in the project because F1000 is not open access.

Now, you might think that’s a noble stand. After all, our chairman is the man who effectively invented open access, and you might be forgiven for thinking that philosophy would permeate his other ventures (you’d be wrong, but you might be forgiven for thinking it). But the more I thought about it, the more I realized how stupid that stand is, and the angrier I became.

Open access has taken on the mantle of a religious crusade. Open access, it seems, is a panacea for all ills, adhered to by faith in the face of any evidence to the contrary. All journals, all publications, should be made freely accessible at the point of consumption, according to their wild-haired, starry-eyed prophets.

To anyone with half a brain, this is ludicrous. Allow me to take the example of F1000 itself, and show you why open access is unsustainable in this instance. It won’t take long.

Faculty of 1000 publishes short evaluations of published papers. Mini-reviews, if you like. About 1200 every month, covering most areas of biology and medicine. We only publish evaluations of papers that are reckoned to be worth reading–important, or interesting, or worth bringing to a wider audience. Depending on discipline, 1-2% of what’s indexed in PubMed makes it into F1000. It’s a filter, highlighting the best work in any particular field.

Who does this evaluating and reckoning?

You do. To be precise, nearly 10,000 scientists and medics, leaders in their respective fields whose opinions, and work, are respected by their peers. Faculty Members. When they see a paper worth evaluating, they’ll write it up, give it a rating and send it in. We’ll edit the report and put it live on the website; categorized and indexed.

Our Faculty Members do this for the good of the community, because they get value from it and because it’s actually quite prestigious to be invited to join the Faculty.

We don’t pay Faculty Members to do this (just like journals don’t pay authors to publish their papers). There are a couple of reasons for this. First, we do not, ever, influence Faculty Members’ choice of papers. We help them choose, by providing tables of contents of journals they might be interested in and providing search tools so they can find papers relevant to their field. But we offer no financial or other incentive; nobody can accuse us of influencing what gets evaluated. We don’t actually, care which papers they pick, as long as they’re good.

But the main reason is that we couldn’t afford to. Twelve hundred evaluations, and we’d probably have to offer at least fifty quid per so Faculty Members didn’t feel insulted: three-quarters of a million pounds per year right there.

And we have a large staff. There are thirty people whose job it is to ring our ten thousand Faculty Members and commission evaluations. You do the math. That’s taking into account the editorial team, hosting, the development team and–because we need to sell this project to finance it–sales and marketing. Because everything is curated, our marginals are significant.

We sell subscriptions to the service. Our charges are based on the number of full-time equivalents at the subscribing institute. I don’t know exactly what we charge, but it’s not horrendously expensive: we used to sell personal subscriptions at US$150 per year (and you get The Scientist thrown in too).

So those subscriptions pay for everything. Yes, we’ve got advertising, but the amount of advertising needed to pay for an operation like this would make the site unusable.

What to do? Personally, I’d love to make F1000 open access. But it’s not going to happen. The only way it might is if we charged our Faculty Members, who we already have to hassle to produce evaluations for you, each time they wrote something. Until publishing on F1000 counts as CV points (and believe me, we’re working on it), that’s not going to happen–and probably not even then.

Look, one of my colleagues is trying to set up another section, or ‘Faculty’ on the site. This involves recruiting a couple of Heads of Faculty, who then appoint Section Heads to run the sub-disciplinary areas. These Section Heads nominate ‘ordinary’ Faculty Members to do the actual evaluating. And we can’t get people to do it, in this specialty. “What will you pay me?” they ask. These mucking fedics have essentially ensured that this particular Faculty is still-born.

And you want it to be open access?

Saying F1000 should be open access is like walking into a shop and saying the bread they sell should be free to anybody who wants it, because that’s what your religion believes. You could, I suppose, persuade somebody to run the infrastructure for free; get someone else (lots of someone elses) to hassle people for their evaluations; have students edit all the text; get someone to come in at 3 in the morning when the server falls over; maybe even get a bunch of like-minded individuals to code the user, editor and contributor websites. But in the real world?

Get a grip.

Posted in Rants | 20 Comments

On hero worship

It’s difficult for me to say who is (or was) my greatest scientific hero. Partly, I think, because growing up I never really thought of science as a potential career (in fact, the only thing I can remember about careers advice in school was mastic asphalt spreading. Whether that was a do or don’t do escapes me, in much the same way that I can remember Hans and Lieselotte and Ich habe mir das Bein gebrochen but have forgotten what came next). I didn’t really think of anything as a career until as late as possible–I did three science ‘A’ levels and combined my two favourites to read Biochemistry, and just did stuff because I liked it.

But I did have heroes, after a fashion and at different stages of my life. David Attenborough, obviously. Harry Secombe was another one, but nothing to do with science. Oddly enough, Fred Hoyle was an early influence, and all because of a book my mother gave me when (at about age 13) it became apparent–to her at least–that I was fated to be a scientist. She thought that seeing as I also like science fiction it might combine the two interests.

The book was Diseases from Space, authored by the great man with Chandra Wickramasinghe, which developed the panspermia hypothesis into a plausible (to me, back then at least) account of how common diseases (‘flu, the common cold, etc.) might be caused by microbes being carried around the solar system in comets and the like. Hoyle is of course more famous for his theory of nucleosynthesis in stars, and for coining the mocking phrase ‘big bang’ in describing (a current theory of) the formation of the known universe. Despite being roundly mocked, he and Wickramasinghe pushed the panspermia theory pretty hard, and I had the honour of inviting Wickramasinghe to guest edit an issue of The Biochemist several years ago, in which the two of them brought us up to date with their thinking.

I will lay claim to one more scientific hero. My undergraduate degree took four years: the first three were fairly standard, with lab practicals and lectures and tutorials, with exams at the end. But the fourth year was research based–I had to write an extended essay, sit a couple of exams that had only two questions apiece (which tells you something about the depth of knowledge required), and complete a lab-based research project. I did my lab project in The Sir William Dunn School of Pathology, famed for being the place where, in of the darkest days of the Second World War, Howard Florey and his team gave us penicillin.

There I managed to bump into some real heroes. Ed Abraham for example, who developed the cephalosporins (which probably helped save my life a few years back). But most of all, Norman Heatley–the technical wizard who made the growth, extraction and quantification of penicillin possible. Henry Harris probably said it best:

Without Fleming, no Chain; without Chain, no Florey; without Florey, no Heatley; without Heatley, no penicillin.

Norman would never, it seems, have sought fame. He wasn’t even recognized by the Nobel committee. He is however, a true scientific hero.


Posted in People | 15 Comments

On apps

(This is a repost of something I just wrote at Naturally Selected, because I thought it might interest you folks too.)

It is no secret I love my iPhone. As a telephony device (in which I include text messages as well as voice) it is very nice indeed, but its real strength, for me, lies in its internet connectivity. Oh, and location services: the most used apps on my iPhone are Mail, Safari and Maps. I have downloaded a few applications, and even bought a couple. I make reasonably heavy use of the Facebook app (it’s pretty poor but it works most of the time) and Echofon (for Twitter); the bought apps I use most are Tube Deluxe (super for getting around London) and MotionX’s GPS (which scores over the inbuilt Maps function because you can download maps before going somewhere that has no internet connection). There are a few other bits and bobs, but notably lacking is anything to do with science or publishing.

I’m not sure whether that’s because I tend to keep the day job off my iPhone, or whether I’ve simply not managed to find anything useful. I suspect I’m not alone in this, so I thought Walter Jessen’s review of iPhone apps for biomedical research might be of interest:

Even though I think that apps are a big step backwards in the evolution of the computer desktop — very few take advantage of the “always connected” nature of the iPhone and exist in isolation — mobile Safari only allows you to have 8 pages open at once. Apps that can handle Web page display increase that number. This is a lifesaver for me, since I routinely have all eight pages in Safari open at any given time.

He talks about apps that cover everything from Nature to the entire human genome project, but rather than recapitulate what Walter says, I invite you to read the original article: there are only 12 apps, each with a descriptive paragraph and a one-liner ‘verdict’. One notable exception to his list is the excellent Papers from mekentosj.com–although he does have the Mendeley Lite instead. (Word of warning: ‘BioGPS’ is not for locating biologists. Just sayin’.)

It remains to be seen whether I will use any of these (I thought, for example, that I already had Papers, but now I can’t find it–which shows you how much I’m using it), but I’m interested in finding out if other people would find any of these apps useful. What do you think is missing from Walter’s list? Would you use a The Scientist and/or and F1000 app? Or, perhaps a Nature Network one?!

Posted in Internet | 21 Comments

On the origin of science writers

I got an email yesterday from somebody asking for advice on getting into science journalism. I hate things like that–I never know how to answer and am always afraid “it was random luck” might be giving away too many secrets.

But then I stumbled across Ed Yong’s thread On the origin of science writers and realized that I could point my correspondent there. Shameless, moi?

Some interesting stories–go take a look if you haven’t seen it.

Oh, and I did contribute, too.

Posted in Me | 11 Comments

On survival

There’s a comment on my work blog that says, essentially, “fuck people: what about the fluffy animals?”.

It’s funny, but perhaps uniquely in the history of Planet Earth (if not the Universe) we as humans are in a position to put the interests of another species above our own. Robert Heinlein must be turning in his grave.

Yes, we have to look after/steward the planet and its inhabitants, insofar as that is necessary for our own survival/quality of life. I could quite happily live without giant pandas–as far as I can tell they’re an utter drain on resources and are too stupid to adapt to new conditions. Why should we care about them? Do they make our life better in any way? (Answer: possibly.) And don’t get me started on mosquitos.

Come the Apocalypse, could we eat them?

But apart from that, if it comes to kicking kittens in the face to save one cancer victim, count me in (h/t Tania).

Actually, come the Apocalypse, can we afford to have people around who would rather save random animals than fight for our survival as a species? That’s not such a daft question–given earthquakes, floods and meteorites, the human race is only a step away from serious trouble. Saving the planet is all well and good if our own survival is assured (and yes, our own survival might very well be contingent on other species’ survival).

Save the planet to save ourselves, sure. But let’s put an end to this nonsense that rates human lives as anything less than mind-numbingly special.

Posted in Nonsense, People | 14 Comments

On having it all

I’ve seen a lot of angst about being a good father/partner, and running a successful career simultaneously. It’s something I wanted to talk about when I first started blogging at Sydney four years ago, but–heh–I’ve been too busy. Here’s a take I saw elsewhere last week:

Can men be great fathers, professionals, lovers, and enjoy their own space all at the same time? No, something has to give–their children lose out, they don’t advance as well as they would like at work, their relationship breaks down, or they get ill or out of shape. I wouldn’t judge which of work, relationship or parenthood career-men should concentrate on at different stages of their career: that’s up to them.

I read somewhere else the other day that the concept that you can have a perfect career and be a role-model dad is clearly false–not to say ‘revolting’. The only way is to delegate the running of your home life to others–housekeepers and nannies. Any successful man has somebody looking after his children for much of the day, and someone to do his laundry too. But then if there’s a nanny, do you actually spend any quality time with your kids? Of course there’s the weekend, but only if you’ve already made it; post-docs and junior faculty who dare to take weekends off (or even go home at a reasonable time) get looked down upon at work, if not positively discriminated against.

So what to do? Should we lower our expectations? That seems like surrender to me.

Why shouldn’t we have it all? I think there are two things you need, but feel free to suggest more. First, you need a thick skin. Bugger what your workmates say about you; prove them wrong. Second, get help at home. I’m lucky enough to have a partner who helps me with the housework, but we also have a fortnightly cleaner. It makes a big difference.

Try it. Isn’t that what we’re born for?

Posted in Science-less Sunday | 52 Comments

On Nature Network, again

You’ll remember last time that I wondered what the point was of Nature Network, and indeed for a few months now a few of us have been wondering whether to set up an independent blogging collective that does what we think Nature Network should have been doing. The whole ScienceBlogs thing with Pepsi sponsorship came as we were talking about the technicalities of doing such a thing, and I see that they’ve already done something along the lines of what we are planning.

I’ve just had a brief twitter conversation with Tim Jones on how twittering and blogging eat into reading and writing time, and Tim made the point that the day job comes first. Put another way, if something doesn’t pay, it’s the first against the wall. And the problem with an independent blogging collective is that it would take some serious time (and a small amount of cash) to do it properly.

But after a glorious ten days or so with only intermittent internet access, I’m seriously beginning to consider the point of blogging at all. Most conversations happen with twitter, and if I want to say a bit more, or engage a bit more, there’s always Facebook (with all its quirks and problems). The kicker is that blogging eats into the limited time I have for writing for ‘fun’–short stories, novels, poems, songs; a whole heap of projects that has been bubbling away for far too long.

So is it really worth continuing to blog? I probably wouldn’t stop completely–it’s nice to have an unwalled garden where anybody can come along and pass the time of day.

And I see that Dan Pollock has responded to the comments we raised on his post last week (or whenever it was. The altitude here in Colorado has rotted my mind). The interesting thing to my mind is that he claims there are long-term plans for NN, but he can’t reveal them for commercially sensitive reasons. That’s set alarm bells ringing, and brings me back to Pepsigate and my conversation with Tim.

First, Dan is falling into the same trap that pissed off the ScienceBloggers–lack of relevant communication. I don’t want to be fobbed off. That leads me to the second thing: if there are really ‘commercially sensitive’ plans for Nature Network, then I want to know what that specifically means for us, the creators of the content.

That’s all, for now.

Posted in Me | 36 Comments

On Nature Network

Foreword: Everything in here has been buzzing around my head for the last few months. It has nothing at all to do with the recent trouble at ScienceBlogs.com, and the main reason I have waited until now before saying anything is that a few of us met with Lou and Matt last week to discuss some of these issues, and I didn’t want to preempt that discussion.

If you know anything about me, then you know that I’ve done my fair share of flag waving (and criticism) of this whole online networking shtick. Search for On the Nature of Networking here for examples. I’ve been involved in online fora since forever, it seems: I started by reading the bionet.molbiol.methods-reagents group on usenet, followed by various hobbyist groups; took in the Science Advisory Board; numerous PHP-type fora; and so on and so forth. I started an online diary–a proto-weblog, really–in about 2001 although I’d been running a website since about 1995. I’ve used the internet for my own gain (and perhaps it has used me, occasionally), and initiated various life- and career-changing events that wouldn’t have been possible without it. “Web 2”, or “social media”, has naturally played its part in this too.

So you might be surprised that recently I’ve been questioning the whole “why” of it. What is the point of online networks?

A couple of years it became a bit of a joke among some of us that there was a new scientific networking site every week. Each one promised to be the “Facebook for scientists”. Of them, I can only remember a couple; perhaps ResearchGate is the one that sticks in the mind, and that for all the wrong reasons (questionable marketing practices being the least of them).

The problem that all these sites came up across was that they didn’t really offer anything that scientists wanted. Scientists already have enough to do online (and don’t underestimate the power of email for making new contacts): so it’s difficult to know what yet another “web 2” site can do for them. Of course there are exceptions: the Science Advisory Board has an active online community, based around its business model of selling opinion to suppliers (and crucially, it rewards scientists and medics for taking part). There are other fora and sites based around tangible products, or shared interests (Mendeley and LabLit are examples in each case). Other sites offer sharing of protocols and methodological tips.

So what is the point of a site that simply says, “Come and be social”?

This is a problem that Nature Network faces. There is no real product, no added value for participants. Sure, you can meet people here, and make lasting friendships (I have done, and I’m very grateful for them). But once those people swap emails, facebook contacts, twitter nicks or whatever, then what is left to do here?

If that isn’t bad enough, the fora at Nature Network are badly organized and very difficult to navigate. It is all but impossible to casually pop by, ask a question, then come and see what’s happening a couple of weeks later. I had to ask where the private bloggers forum was a week ago! (And yes, I’d posted on there previously.) Martin Fenner and myself and a few others launched a ‘good writing’ forum here. Heaven only knows where it is–I keep getting email alerts but nobody knows it is there, nobody can find it; you can’t see it when you rock up to Nature Network all fresh faced and bushy tailed.

So I’m beginning to wonder, does Nature Network itself have a point any longer? If as I’ve argued above the value comes from finding that people exist, then after we’ve met each other and moved on, is it time to let it die a natural death?

Oh, you say, what about the blogs?

It’s not MT4, it’s a very naughty boy.

Oh yes.

I’ve been writing here since 2007. It was pretty quiet back then. I was, truth be told, pretty darn stoked to be asked. Nature! There seemed a small number of good and interesting writers, and there was a certain cachet associated–at least, for an academic.

But then things started to go a little wonky.

The cracks in the blogging platform started showing. They’d always been there, but as the bloggers got more sophisticated, they began to expect more; and the platform wasn’t delivering. Moveable Type 4 was promised, and promised, and promised…

It become a running joke. “MT4 will fix that,” people would aver when faced with a technical glitch. Other bloggers would nod knowingly. No space to upload images? “MT4 will fix that.” Wonky HTML? “MT4 will fix that.” Inability to customize blogrolls? “MT4 will fix that.”

Then, MT4 finally turned up, and what a disaster that turned out to be. I was locked out for a week. I had to have two different logins–one for my blog, and one for the rest of the network. I still have to log in each time I want to comment on a different blog. When I’m logged in, I have to refresh the page to write a post or report spam (and I have no idea what happens to my spam reports by the way). It takes a geological epoch to log in some days, I have to log in every five minutes (and I’ve learned to copy comments to the clipboard before hitting ‘submit’ because there’s a good chance it’ll all disappear into the ether) and if I go to a bookmarked link (because as I said above it’s impossible to navigate) without being logged on I get a really helpful blank page.

Now, those are technical glitches that presumably could be fixed (maybe in MT+6 weeks as I’ve taken to calling it). But not only should it never have been allowed to get to that state, each little thing that’s wrong makes me less inclined to participate. Hence the low rate of posting here recently.

But there’s more than that.

One of the things that attracted me to NN in the first place, as I say, was the cachet of Nature. Now, I’m no longer a research scientist, so that doesn’t really draw me any more. But also, NN has a bit of a negative cachet in the rest of the blogome–where, actually, I’m more interested in being seen and accepted. It has a high barrier to casual commenting (the lifeblood of blogs!)–a stratospheric barrier to non-scientists. Furthermore, there are too many blogs hosted here.

Is that a problem?

Well, yes. Being invited to write on NN was something special, back in the day. And now we have a load of–quite frankly–boring and badly written blogs cluttering up the Network. One of the great things about NN was that the most recent blogs would appear on what I like to think of as the ‘front page’: network.nature.com/blogs/. At a glance I could see what was happening in the community; the blogs and the comments. It was easy to keep abreast, to engage, to see what was going on. Now the amount of traffic makes it very difficult indeed–and yes, I could use RSS to keep track of the things I’m interested in, as I do for other non-networked blogs, but then where is the point in Nature Network?

Moreover, where is my visibility to the outside world? This walled garden has its advantages; we’re more civil, generally, and have some really great conversations because of the set-up; but with all the noise going on what are the chances of being featured so that the outside world can see me?

Is that an ego thing? Maybe it is, but for the love of Pete I’m a blogger. If there’s anything bigger than my ego I want it shot and brought to me on a plate right now.

Seriously though, NN is just too big to work, now. The number of comments is lower, the half life of posts much shorter; the noise is louder.

So I’m led to ask, what’s in it for me? NN gave me a free platform, a little bit of publicity, and I’ve given them a shedload of good writing, free publicity and a fair amount of goodwill, I’d wager. Now, I think I’d like something back. I’d like some acknowledgement of what I’ve done and can do, and at a bare minimum that should include a site that works and some decent visibility.

After all, I have technical chops. It’s not that difficult to set up an independent blog, and market it successfully. And today, when my posts are buried beneath boring reports of suck-up meetings and the technical problems that make writing here a chore have mumbled along for half a year, I’m wondering whether it’s worth staying.

Harsh? Maybe, but there’s more.

Currently, Nature Network is looked after (babysat?) by Lou Woodley. She’s the only full-time Nature staffer with responsibility for the place. She works hard, she tries hard, and she does a pretty good job with limited resources and tools. Matt Brown helps out, but he’s freelance so can go and do more fun stuff if he wants. The problem is that Lou is working pretty much in a vacuum. Where is the upper management support for NN? Where is the vision?

If there is no serious commitment to NN at NPG (and if I’m wrong about this and there is vision and real belief in NN’s mission, I’d like to know the name of the senior manager responsible, please), then who’s to say the plug won’t be pulled tomorrow, or next week, or in MT+6 weeks?

I get random people asking me for help with marketing or their experiments. All right, I can get that anyway because I don’t hide online, but there seems to be this sense of entitlement to my opinion just because I’m on NN. I can do without that, actually. I can do without the bugs, I can do without the lack of visibility, I can do without getting snapped at when I point out a bug or complain about something; I can do without people thinking I get paid for this, actually. Yes, I have a lot to be grateful to NN for, but over the last year more and more it feels like what I’m getting out isn’t worth what I’m putting in anymore.

So, there’s a couple of questions that remain.

First, assuming that NPG in some way benefits from my blog, what do I as a writer now hope to gain from Nature Network? What’s in it for me?

Second, is there any reason I shouldn’t move my main blogging activity to my own site; and/or set up a separate, independent blogging collective for some like-minded individuals?

For much of the next two weeks I plan on having no internet access. I’m going to think about these questions, and maybe a plan will have crystallized during that time.

Meantimes, peace.

Posted in Me | 130 Comments

On global warming

It was pretty cold this winter, at least in the UK. Lots of the anthropogenic global warming twonks (‘deniers’ or ‘sceptics’ in other places. I say call a spade an implement for moving dirt from one place to another) scoffed loudly, saying,

“It’s bloody freezing, where is this global warming of which you speak?”

I observed that in the event of a subsequent hot summer, those same twonks would be silent.

[Washington] just endured its hottest June since records began in 1872, according to the National Oceanic and Atmospheric Administration. So did Miami. Atlanta suffered its second-hottest June, and Dallas had its third hottest.

In New York, the weather was relatively pleasant: only the fourth-hottest June since 1872. Then again, New York is on pace for its hottest July on record.

(h/t Olive Heffernan)

Where are the twonks now?

It’s natural to associate what you observe locally–temporally or spatially–with the larger picture. A friend on facebook just commented According to the met office, its showery here just now… according to the window, its a beautiful sunny day! Even the New York Times falls into the same trap in this very article:

Yet when United States senators and their aides file into work on Wednesday, on yet another 90-degree day, they may be on the verge of deciding to do approximately nothing about global warming.

The twonks fail to understand that ‘data’ is not the plural of ‘anecdote’ (and by not wanting to change their lifestyle for the good of the race as a whole, of course).

Science is a big picture exercise. Learning about trends, the importance of robustness, all that sort of guff, is hard.

Posted in Nonsense | Tagged | 3 Comments

On Scienceblogs

Following PepsiGate, I’m opening a book on who’ll be next to jump ship.

Currently we’re offering 3 to 1 on Drugmonkey.

Posted in Nonsense | 42 Comments